Tutorials for CIBNOR NGS Metagenomics
Link to IDs
Schedule
Thursday, May 28, Day 4
Morning
- Lecture 1 - Introduction to Scientific Computing
- Lecture 2 - Introduction to Cloud Computing
- Tutorial A - Launching a virtual machine with cloud computing
- Tutorial B - Alignment with BLAST
Afternoon
- Tutorial B - In-class exercise on assembly
- Lecture 3 - Assembly and metagenomics assembly
- Illumina seminar
Friday, May 29, Day 5
Morning
- Lecture 1 - Review
- Log into an AWS instance
- Tutorial C - Downloading datasets from NCBI
Some useful information for tutorial C.
Table of return values for eutils [
Afternoon
- Tutorial D - Metagenomics Assembly tutorial
- Questions and Wrap Up - perhaps some coding if there is interest
Many many more tutorials that you can perform on the Amazon Cloud: Two week long NGS Course
Webpage for where Adina does sequencing services
Many tutorials
Contact information
Adina Howe
adina@iastate.edu
twitter: @teeniedeenie